A - Single Proteins:

Name	Rrp40
Species	Saccharomyces cerevisiae
Complex ID	500
Molecular description	Exonuclease belonging to the Exosome complex
Publication	Oddone, A., Lorentzen, E., Basquin, J., Gasch, A., Rybin, V., Conti, E., Sattler, M. Structural and Biochemical Characterization of the Yeast Exosome Component Rrp40 EMBO Reports v8 pp.63 , 2007 (PubMed)
PDB entry	2ja9
Partner	16A
Name	Arc1p
Species	Saccharomyces cerevisiae
Complex ID	243
Molecular description	N-terminal domain of GU4 nucleic-binding protein (export factor)
Publication	Simader, H., Hothorn, M., Suck, D. Structures of the interacting domains from yeast glutamyl-tRNA synthetase and tRNA-aminoacylation and nuclear-export cofactor Arc1p reveal a novel function for an old fold. ACTA D v62 pp.1510-1519 , 2006 (PubMed)
PDB entry	2hqt
Partner	16A
Name	Ynr046w/Tmr12
Species	Saccharomyces cerevisiae
Complex ID	065
Molecular description	Zinc finger protein from the eRF1 methyltransferase complex
Publication	Heurgue-Hamard, V., Graille, M., Scrima, N., Ulryck, N., Champ, S., Van Tilbeurgh, H., Buckingham, R.H. The Zinc Finger Protein Ynr046W is Plurifunctional and a Component of the Erf1 Methyltransferase in Yeast. J.Biol.Chem. v281 pp.36140 , 2006 (PubMed)
PDB entry	2j6a
Partner	3A
Name	SEPT2 G domain
Species	Homo sapiens
Complex ID	079
Molecular description	Human SEPT2 G domain of the septin complex
Publication	Sirajuddin, M.,  Farkasovsky, M.,  Hauer, F.,  Kuehlmann, D.,  Macara, I.G..,  Weyand, M.,  Stark, H.,  Wittinghofer, A. Structural insights into filament formation by mammalian septins Nature , 2007 (PubMed)
PDB entry	2qa5
Partner	2A
Name	GAR1
Species	Saccharomyces cerevisiae
Complex ID	?
Molecular description	Structure of the Gar1 domain of Naf1
Publication	Leulliot, N.,  Godin, K.S.,  Hoareau-Aveilla, C.,  Quevillon-Cheruel, S.,  Varani, G.,  Henry, Y.,  Van Tilbeurgh, H. The Box H Aca Rnp Assembly Factor Naf1P Contains a Domain Homologous to Gar1P Mediating its Interaction with Cbf5P. (To be Published)
PDB entry	2v3m
Partner	3A
Name	Emg1
Species	Saccharomyces cerevisiae
Complex ID	?
Molecular description	The yeast ribosome synthesis factor Emg1 alpha beta knot fold methyltransferase
Publication	Leulliot, N.,  Bohnsack, M.T.,  Graille, M.,  Tollervey, D.,  Van Tilbeurgh, H. The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha Beta Knot Fold Methyltransferases. Nucleic Acid Res 2008
PDB entry	2v3k
Partner	3A
Name	Trm8
Species	Saccharomyces cerevisiae
Complex ID	1506
Molecular description	The catalytic subunit of the binary 7-methylguanosine tRNA methyltranferase complex
Publication	Leulliot, N.,  Chaillet, M.,  Durand, D.,  Ulryck, N.,  Van Tilbeurgh, H. Structure of the Yeast tRNA M7G Methylation Complex Structure 2008
PDB entry	2vdv
Partner	3A
Name	Dom34
Species	Saccharomyces cerevisiae
Complex ID	(new)
Molecular description	Protein related to translational termination factor Erf1
Publication	Graille, M.,  Chaillet, M.,  Van Tilbeurgh, H. Structure of Yeast Dom34: A Protein Related to Translation Termination Factor Erf1 and Involved in No-Go Decay JBC 2008
PDB entry	2vgn
Partner	3A

B - Complexes:

Name	Rpb41-Rpb42
Species	Sulfolobus solfataricum
Complex ID	500
Molecular description	RNase PH core of the archaeal exosome
Publication	Lorentzen, E., Walter, P., Fribourg, S., Evguenieva-Hackenberg, E., Klug, G., Conti, E. The Archaeal Exosome is a Hexameric Ring with Three Catalytic Subunits Nat.Struct.Mol.Biol. v12 pp.575 , 2005 (PubMed)
PDB entry	2br2
Partner	16A
Name	Rpb41-Rpb42-A5RNA
Species	Sulfolobus solfataricum
Complex ID	500
Molecular description	RNase PH core of the archaeal exosome in complex with A5 RNA
Publication	Lorentzen, E., Conti, E. Structural Basis of 3' End RNA Recognition and Exoribonucleolytic Cleavage by an Exosome Rnase Ph Core. Mol.Cell.Biol. v20 pp.473 , 2005 (PubMed)
PDB entry	2c38
Partner	16A
Name	Pol II-RNA inhibitor
Species	Saccharomyces cerevisiae
Complex ID	145
Molecular description	Complete RNA Polymerase II-RNA inhibitor complex
Publication	Kettenberger, H., Eisenfuehr, A., Brueckner, F., Theis, M., Famulok, M., Cramer, P. Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs Nat.Struct.Mol.Biol. v13 pp.44-48 , 2006 (PubMed)
PDB entry	2b63
Partner	4
Name	Med18/20
Species	Saccharomyces cerevisiae
Complex ID	139
Molecular description	Mediator head submodule (heterodimer)
Publication	Lariviere, L., Geiger, S., Hoeppner, S., Rother, S., Strasser, K., Cramer, P. Structure and TBP binding of the Mediator head subcomplex Med8-Med18-Med20. Nat.Struct.Mol.Biol. v13 pp.895-901 , 2006 (PubMed)
PDB entry	2hzm
Partner	4
Name	Med8C/18/20
Species	Saccharomyces cerevisiae
Complex ID	139
Molecular description	Mediator head submodule (heterotrimer)
Publication	Lariviere, L., Geiger, S., Hoeppner, S., Rother, S., Strasser, K., Cramer, P. Structure and TBP binding of the Mediator head subcomplex Med8-Med18-Med20. Nat.Struct.Mol.Biol. v13 pp.895-901 , 2006 (PubMed)
PDB entry	2hzs
Partner	4
Name	Tau60-Tau91
Species	Saccharomyces cerevisiae
Complex ID	001
Molecular description	Subcomplex of yeast transcription factor IIIC
Publication	Mylona, A., Fernandez-Tornero, C., Legrand, P., Haupt, M., Sentenac, A., Acker, J., Muller, C.W. Structure of the Tau60/Deltatau91 Subcomplex of Yeast Transcription Factor IIIC: Insights Into Preinitiation Complex Assembly Molecular Cell v24 pp.221 , 2006 (PubMed)
PDB entry	2j04
Partner	16B
Name	MetRS-Arc1p
Species	Saccharomyces cerevisiae
Complex ID	243
Molecular description	Binary subcomplex of yeast aminoacyl-tRNA synthase
Publication	Simader, H., Hothorn, M., Kohler, C., Basquin, J., Simos, G., Suck, D. Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes. Nucleic Acids Res. v34 pp.3968-3979 , 2006 (PubMed)
PDB entry	2hsn
Partner	16A
Name	GluRS-Arc1p
Species	Saccharomyces cerevisiae
Complex ID	243
Molecular description	Binary subcomplex of yeast aminoacyl-tRNA synthase
Publication	Simader, H., Hothorn, M., Kohler, C., Basquin, J., Simos, G., Suck, D. Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes. Nucleic Acids Res. v34 pp.3968-3979 , 2006 (PubMed)
PDB entry	2hrk
Partner	16A
Name	Rpb41-Rpb42-Rpb4
Species	Sulfolobus solfataricum
Complex ID	500
Molecular description	9-subunit archaeal exosome
Publication	Lorentzen, E., Dziembowski, A., Lindner, D., Seraphin, B., Conti, E. RNA Channeling by the Archaeal Exosome EMBO Rep. May;8(5):470-6, 2007 (PubMed)
PDB entry	2ja6
Partner	3B, 16A, 18
Name	Rpb41-Rpb42-Rpb4-RNA
Species	Sulfolobus solfataricum
Complex ID	500
Molecular description	9-subunit archaeal exosome in complex with RNA
Publication	Lorentzen, E., Dziembowski, A., Lindner, D., Seraphin, B., Conti, E. RNA Channeling by the Archaeal Exosome EMBO Rep. May;8(5):470-6, 2007 (PubMed)
PDB entry	2jea
Partner	3B, 16A, 18
Name	SEPT2/SEPT6/SEPT7
Species	Homo sapiens
Complex ID	079
Molecular description	Human septin trimer 2/6/7
Publication	Sirajuddin, M.,  Farkasovsky, M.,  Hauer, F.,  Kuehlmann, D.,  Macara, I.G..,  Weyand, M.,  Stark, H.,  Wittinghofer, A. Structural insights into filament formation by mammalian septins Nature , 2007 (PubMed)
PDB entry	2qag
Partner	2A
Name	Trm8/Trm82
Species	Saccharomyces cerevisiae
Complex ID	1506
Molecular description	The binary 7-methylguanosine tRNA methyltranferase complex
Publication	Leulliot, N.,  Chaillet, M.,  Durand, D.,  Ulryck, N.,  Van Tilbeurgh, H. Structure of the Yeast tRNA M7G Methylation Complex Structure, 2008
PDB entry	2vdu
Partner	3A
Name	INCEP/Survivin/Borealin
Species	Homo sapiens
Complex ID	(new)
Molecular description	Engineered Chromosomal Passenger Complex
Publication	eyaprakash, A.A.,  Klein, U.R.,  Lindner, D.,  Ebert, J.,  Nigg, E.A.,  Conti, E. (2007) Structure of a Survivin-Borealin-INCENP Core Complex Reveals How Chromosomal Passengers Travel Together. Cell
PDB entry	2qfa
Partner	2B