3D Repertoire X-ray Structures
A - Single Proteins:
|
| Name |
Rrp40 |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
500 |
| Molecular description |
Exonuclease belonging to the Exosome complex |
| Publication |
Oddone, A., Lorentzen, E., Basquin, J., Gasch, A., Rybin, V., Conti, E., Sattler, M. Structural and Biochemical Characterization of the Yeast Exosome Component Rrp40 EMBO Reports v8 pp.63 , 2007 (PubMed) |
| PDB entry |
2ja9 |
| Partner |
16A |
|
| Name |
Arc1p |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
243 |
| Molecular description |
N-terminal domain of GU4 nucleic-binding protein (export factor) |
| Publication |
Simader, H., Hothorn, M., Suck, D. Structures of the interacting domains from yeast glutamyl-tRNA synthetase and tRNA-aminoacylation and nuclear-export cofactor Arc1p reveal a novel function for an old fold. ACTA D v62 pp.1510-1519 , 2006 (PubMed) |
| PDB entry |
2hqt |
| Partner |
16A |
|
| Name |
Ynr046w/Tmr12 |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
065 |
| Molecular description |
Zinc finger protein from the eRF1 methyltransferase complex |
| Publication |
Heurgue-Hamard, V., Graille, M., Scrima, N., Ulryck, N., Champ, S., Van Tilbeurgh, H., Buckingham, R.H. The Zinc Finger Protein Ynr046W is Plurifunctional and a Component of the Erf1 Methyltransferase in Yeast. J.Biol.Chem. v281 pp.36140 , 2006 (PubMed) |
| PDB entry |
2j6a |
| Partner |
3A |
|
| Name |
SEPT2 G domain |
 |
| Species |
Homo sapiens |
| Complex ID |
079 |
| Molecular description |
Human SEPT2 G domain of the septin complex |
| Publication |
Sirajuddin, M., Farkasovsky, M., Hauer, F., Kuehlmann, D., Macara, I.G.., Weyand, M., Stark, H., Wittinghofer, A. Structural insights into filament formation by mammalian septins Nature , 2007 (PubMed) |
| PDB entry |
2qa5 |
| Partner |
2A |
|
| Name |
GAR1 |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
? |
| Molecular description |
Structure of the Gar1 domain of Naf1 |
| Publication |
Leulliot, N., Godin, K.S., Hoareau-Aveilla, C., Quevillon-Cheruel, S., Varani, G., Henry, Y., Van Tilbeurgh, H. The Box H Aca Rnp Assembly Factor Naf1P Contains a Domain Homologous to Gar1P Mediating its Interaction with Cbf5P. (To be Published) |
| PDB entry |
2v3m |
| Partner |
3A |
|
| Name |
Emg1 |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
? |
| Molecular description |
The yeast ribosome synthesis factor Emg1 alpha beta knot fold methyltransferase |
| Publication |
Leulliot, N., Bohnsack, M.T., Graille, M., Tollervey, D., Van Tilbeurgh, H. The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha Beta Knot Fold Methyltransferases. Nucleic Acid Res 2008 |
| PDB entry |
2v3k |
| Partner |
3A |
|
| Name |
Trm8 |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
1506 |
| Molecular description |
The catalytic subunit of the binary 7-methylguanosine tRNA methyltranferase complex |
| Publication |
Leulliot, N., Chaillet, M., Durand, D., Ulryck, N., Van Tilbeurgh, H. Structure of the Yeast tRNA M7G Methylation Complex Structure 2008 |
| PDB entry |
2vdv |
| Partner |
3A |
|
| Name |
Dom34 |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
(new) |
| Molecular description |
Protein related to translational termination factor Erf1 |
| Publication |
Graille, M., Chaillet, M., Van Tilbeurgh, H. Structure of Yeast Dom34: A Protein Related to Translation Termination Factor Erf1 and Involved in No-Go Decay JBC 2008 |
| PDB entry |
2vgn |
| Partner |
3A |
|
B - Complexes:
|
| Name |
Rpb41-Rpb42 |
 |
| Species |
Sulfolobus solfataricum |
| Complex ID |
500 |
| Molecular description |
RNase PH core of the archaeal exosome |
| Publication |
Lorentzen, E., Walter, P., Fribourg, S., Evguenieva-Hackenberg, E., Klug, G., Conti, E. The Archaeal Exosome is a Hexameric Ring with Three Catalytic Subunits Nat.Struct.Mol.Biol. v12 pp.575 , 2005 (PubMed) |
| PDB entry |
2br2 |
| Partner |
16A |
|
| Name |
Rpb41-Rpb42-A5RNA |
 |
| Species |
Sulfolobus solfataricum |
| Complex ID |
500 |
| Molecular description |
RNase PH core of the archaeal exosome in complex with A5 RNA |
| Publication |
Lorentzen, E., Conti, E. Structural Basis of 3' End RNA Recognition and Exoribonucleolytic Cleavage by an Exosome Rnase Ph Core. Mol.Cell.Biol. v20 pp.473 , 2005 (PubMed) |
| PDB entry |
2c38 |
| Partner |
16A |
|
| Name |
Pol II-RNA inhibitor |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
145 |
| Molecular description |
Complete RNA Polymerase II-RNA inhibitor complex |
| Publication |
Kettenberger, H., Eisenfuehr, A., Brueckner, F., Theis, M., Famulok, M., Cramer, P. Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs Nat.Struct.Mol.Biol. v13 pp.44-48 , 2006 (PubMed) |
| PDB entry |
2b63 |
| Partner |
4 |
|
| Name |
Med18/20 |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
139 |
| Molecular description |
Mediator head submodule (heterodimer) |
| Publication |
Lariviere, L., Geiger, S., Hoeppner, S., Rother, S., Strasser, K., Cramer, P. Structure and TBP binding of the Mediator head subcomplex Med8-Med18-Med20. Nat.Struct.Mol.Biol. v13 pp.895-901 , 2006 (PubMed) |
| PDB entry |
2hzm |
| Partner |
4 |
|
| Name |
Med8C/18/20 |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
139 |
| Molecular description |
Mediator head submodule (heterotrimer) |
| Publication |
Lariviere, L., Geiger, S., Hoeppner, S., Rother, S., Strasser, K., Cramer, P. Structure and TBP binding of the Mediator head subcomplex Med8-Med18-Med20. Nat.Struct.Mol.Biol. v13 pp.895-901 , 2006 (PubMed) |
| PDB entry |
2hzs |
| Partner |
4 |
|
| Name |
Tau60-Tau91 |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
001 |
| Molecular description |
Subcomplex of yeast transcription factor IIIC |
| Publication |
Mylona, A., Fernandez-Tornero, C., Legrand, P., Haupt, M., Sentenac, A., Acker, J., Muller, C.W. Structure of the Tau60/Deltatau91 Subcomplex of Yeast Transcription Factor IIIC: Insights Into Preinitiation Complex Assembly Molecular Cell v24 pp.221 , 2006 (PubMed) |
| PDB entry |
2j04 |
| Partner |
16B |
|
| Name |
MetRS-Arc1p |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
243 |
| Molecular description |
Binary subcomplex of yeast aminoacyl-tRNA synthase |
| Publication |
Simader, H., Hothorn, M., Kohler, C., Basquin, J., Simos, G., Suck, D. Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes. Nucleic Acids Res. v34 pp.3968-3979 , 2006 (PubMed) |
| PDB entry |
2hsn |
| Partner |
16A |
|
| Name |
GluRS-Arc1p |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
243 |
| Molecular description |
Binary subcomplex of yeast aminoacyl-tRNA synthase |
| Publication |
Simader, H., Hothorn, M., Kohler, C., Basquin, J., Simos, G., Suck, D. Structural basis of yeast aminoacyl-tRNA synthetase complex formation revealed by crystal structures of two binary sub-complexes. Nucleic Acids Res. v34 pp.3968-3979 , 2006 (PubMed) |
| PDB entry |
2hrk |
| Partner |
16A |
|
| Name |
Rpb41-Rpb42-Rpb4 |
 |
| Species |
Sulfolobus solfataricum |
| Complex ID |
500 |
| Molecular description |
9-subunit archaeal exosome |
| Publication |
Lorentzen, E., Dziembowski, A., Lindner, D., Seraphin, B., Conti, E. RNA Channeling by the Archaeal Exosome EMBO Rep. May;8(5):470-6, 2007 (PubMed) |
| PDB entry |
2ja6 |
| Partner |
3B, 16A, 18 |
|
| Name |
Rpb41-Rpb42-Rpb4-RNA |
 |
| Species |
Sulfolobus solfataricum |
| Complex ID |
500 |
| Molecular description |
9-subunit archaeal exosome in complex with RNA |
| Publication |
Lorentzen, E., Dziembowski, A., Lindner, D., Seraphin, B., Conti, E. RNA Channeling by the Archaeal Exosome EMBO Rep. May;8(5):470-6, 2007 (PubMed) |
| PDB entry |
2jea |
| Partner |
3B, 16A, 18 |
|
| Name |
SEPT2/SEPT6/SEPT7 |
 |
| Species |
Homo sapiens |
| Complex ID |
079 |
| Molecular description |
Human septin trimer 2/6/7 |
| Publication |
Sirajuddin, M., Farkasovsky, M., Hauer, F., Kuehlmann, D., Macara, I.G.., Weyand, M., Stark, H., Wittinghofer, A. Structural insights into filament formation by mammalian septins Nature , 2007 (PubMed) |
| PDB entry |
2qag |
| Partner |
2A |
|
| Name |
Trm8/Trm82 |
 |
| Species |
Saccharomyces cerevisiae |
| Complex ID |
1506 |
| Molecular description |
The binary 7-methylguanosine tRNA methyltranferase complex |
| Publication |
Leulliot, N., Chaillet, M., Durand, D., Ulryck, N., Van Tilbeurgh, H. Structure of the Yeast tRNA M7G Methylation Complex Structure, 2008 |
| PDB entry |
2vdu |
| Partner |
3A |
|
| Name |
INCEP/Survivin/Borealin |
 |
| Species |
Homo sapiens |
| Complex ID |
(new) |
| Molecular description |
Engineered Chromosomal Passenger Complex |
| Publication |
eyaprakash, A.A., Klein, U.R., Lindner, D., Ebert, J., Nigg, E.A., Conti, E. (2007) Structure of a Survivin-Borealin-INCENP Core Complex Reveals How Chromosomal Passengers Travel Together. Cell |
| PDB entry |
2qfa |
| Partner |
2B |
|
|
|